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LOC107986494 uncharacterized LOC107986494 [ Homo sapiens (human) ]

Gene ID: 107986494, updated on 10-Oct-2023

Summary

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Gene symbol
LOC107986494
Gene description
uncharacterized LOC107986494
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5q35.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (179375035..179378944, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (179928405..179932313, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 2 Neighboring gene uncharacterized LOC124900195 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178619033-178619724 Neighboring gene Sharpr-MPRA regulatory region 9172 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178636495-178636995 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178644493-178645348 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178660748-178661408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178661409-178662067 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:178691371-178692266 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:178692267-178693160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178728767-178729266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178747039-178747538 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178759497-178760033 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178762827-178763626 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178763627-178764426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178764427-178765226 Neighboring gene uncharacterized LOC105377759 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178795338-178796033 Neighboring gene uncharacterized LOC124901149 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178814001-178814502 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:178819998-178821197 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178848149-178848650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178848651-178849150 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:178895226-178895950 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178899385-178899886 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178899887-178900386 Neighboring gene U4 spliceosomal RNA Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23749 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178926962-178927462 Neighboring gene uncharacterized LOC100128622 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16729 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:178941125-178941972 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:178945330-178946105

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    179375035..179378944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001743041.1 RNA Sequence

  2. XR_007059082.1 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_016107298.1 Reference GRCh38.p14 PATCHES

    Range
    139742..143651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002959065.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    179928405..179932313 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076194.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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