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Slco3a1 solute carrier organic anion transporter family, member 3a1 [ Mus musculus (house mouse) ]

Gene ID: 108116, updated on 23-Jun-2021

Summary

Official Symbol
Slco3a1provided by MGI
Official Full Name
solute carrier organic anion transporter family, member 3a1provided by MGI
Primary source
MGI:MGI:1351867
See related
Ensembl:ENSMUSG00000025790
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A; MJA; OAT; Anr1; MJAM; Slc21; OATP-D; R75096; Slc21a11; 5830414C08Rik
Expression
Broad expression in lung adult (RPKM 34.1), ovary adult (RPKM 22.9) and 24 other tissues See more
Orthologs
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Genomic context

See Slco3a1 in Genome Data Viewer
Location:
7; 7 D1
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (73925166..74204528, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (74275418..74554780, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (81420304..81699666, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 Neighboring gene alpha-enolase pseudogene Neighboring gene uncharacterized LOC118567488 Neighboring gene predicted gene, 39037

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within ion transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within oligopeptide transport ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within organic anion transport ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of NF-kappaB transcription factor activity ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of protein phosphorylation ISO
Inferred from Sequence Orthology
more info
 
involved_in prostaglandin transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in prostaglandin transport ISO
Inferred from Sequence Orthology
more info
 
involved_in sodium-independent organic anion transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in apical plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in basal plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in cell surface ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
solute carrier organic anion transporter family member 3A1
Names
androgen regulated protein 1
organic anion-transporting polypeptide D
sodium-independent organic anion transporter D
solute carrier family 21 (organic anion transporter), member 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001038643.1NP_001033732.1  solute carrier organic anion transporter family member 3A1 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) includes a 3' terminal exon that extends past a splice site used in variant 1. The resulting protein (isoform 2) is shorter and has a distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AC114591, AK031280, AK037938
    Consensus CDS
    CCDS21366.1
    UniProtKB/Swiss-Prot
    Q8R3L5
    Related
    ENSMUSP00000095973.3, ENSMUST00000098371.9
    Conserved Domains (1) summary
    cd17402
    Location:39563
    MFS_SLCO3_OATP3; Solute carrier organic anion transporter 3 family of the Major Facilitator Superfamily of transporters
  2. NM_023908.2NP_076397.2  solute carrier organic anion transporter family member 3A1 isoform 1

    See identical proteins and their annotated locations for NP_076397.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
    Source sequence(s)
    AK031280, AK046945, AK152488
    Consensus CDS
    CCDS21367.1
    UniProtKB/Swiss-Prot
    Q8R3L5
    Related
    ENSMUSP00000026897.8, ENSMUST00000026897.14
    Conserved Domains (1) summary
    cd17402
    Location:39563
    MFS_SLCO3_OATP3; Solute carrier organic anion transporter 3 family of the Major Facilitator Superfamily of transporters

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    73925166..74204528 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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