LOC108175343 SUGT1P3 overlapping homotypic cluster of transcription factor binding sites enhancer [Homo sapiens (human)] - Gene

Summary

Gene symbol: LOC108175343
Gene description: SUGT1P3 overlapping homotypic cluster of transcription factor binding sites enhancer
Gene type: biological region
Feature type(s): misc_feature: conserved_region
regulatory: enhancer
RefSeq status: REVIEWED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary: This genomic region overlaps a 3' exon of the SUGT1P3 transcribed pseudogene (SGT1 homolog, MIS12 kinetochore complex assembly cochaperone pseudogene 3; also known as SUGT1L1). It was identified as a homotypic cluster of transcription factor binding sites (HCT) based on the presence of multiple binding motifs for POU3F2 (POU class 3 homeobox 2). This HCT was validated as a functional enhancer in transgenic reporter assays in zebrafish. [provided by RefSeq, Jun 2016]
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Genomic context

Location:: 13q14.11

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	13	NC_000013.11 (40911482..40912189)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	13	NC_060937.1 (40130448..40131155)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	13	NC_000013.10 (41485618..41486325)

Chromosome 13 - NC_000013.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

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General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.