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si:dkey-246e3.4 si:dkey-246e3.4 [ Danio rerio (zebrafish) ]

Gene ID: 108180247, updated on 11-Apr-2024

Summary

Official Symbol
si:dkey-246e3.4provided by ZNC
Official Full Name
si:dkey-246e3.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-130531-58
See related
Ensembl:ENSDARG00000086390 AllianceGenome:ZFIN:ZDB-GENE-130531-58
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:
chromosome: 20
Exon count:
1
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (46240347..46241662)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (46336648..46337950)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene trace amine-associated receptor 10 Neighboring gene syntaxin 7-like Neighboring gene trace amine associated receptor 14a Neighboring gene trace amine associated receptor 14l Neighboring gene trace amine associated receptor 14h

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables trace-amine receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
trace amine-associated receptor 13c-like
Names
zmp:0000000886

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    46240347..46241662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017352585.2XP_017208074.1  trace amine-associated receptor 13c-like

    UniProtKB/TrEMBL
    A0A8M9PSX3
    Related
    ENSDARP00000106308.1, ENSDART00000121451.3
    Conserved Domains (2) summary
    cd14964
    Location:3054
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:28309
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395345.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    224584..225899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474443.1XP_021330118.1  trace amine-associated receptor 13c-like

    UniProtKB/TrEMBL
    A0A8M9PSX3
    Conserved Domains (2) summary
    cd14964
    Location:3054
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:28309
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily