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lamp5 lysosomal associated membrane protein family member 5 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108258042, updated on 14-Mar-2024

Summary

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Gene symbol
lamp5
Gene description
lysosomal associated membrane protein family member 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 25
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 25 NC_030440.2 (5608423..5615054, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 25 NC_030440.1 (14115113..14121650)

Chromosome 25 - NC_030440.2Genomic Context describing neighboring genes Neighboring gene galectin-3 Neighboring gene p21 protein (Cdc42/Rac)-activated kinase 5 Neighboring gene ankyrin repeat domain-containing protein 34B-like Neighboring gene 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysosome-associated membrane glycoprotein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030440.2 Reference Coco_2.0 Primary Assembly

    Range
    5608423..5615054 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017456293.3 → XP_017311782.1  lysosome-associated membrane glycoprotein 5

    UniProtKB/TrEMBL
    A0A2D0Q0H5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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