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tbx3a T-box transcription factor 3a [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108260432, updated on 14-Mar-2024

Summary

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Gene symbol
tbx3a
Gene description
T-box transcription factor 3a
See related
Ensembl:ENSIPUG00000015749
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
tbx3
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 28
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 28 NC_030443.2 (14953928..14961788, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 28 NC_030443.1 (13427001..13435650, complement)

Chromosome 28 - NC_030443.2Genomic Context describing neighboring genes Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 Neighboring gene T-box transcription factor 5a Neighboring gene uncharacterized LOC128629370 Neighboring gene craniofacial development protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac chamber development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart looping IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX3a
Names
T-box 3
T-box transcription factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030443.2 Reference Coco_2.0 Primary Assembly

    Range
    14953928..14961788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017460723.3 → XP_017316212.1  T-box transcription factor TBX3a isoform X1

    UniProtKB/TrEMBL
    A0A2D0QD34

  2. XM_017460724.3 → XP_017316213.1  T-box transcription factor TBX3a isoform X2

    UniProtKB/TrEMBL
    A0A2D0QC04
    Related
    ENSIPUP00000023259.1
Nucleotide Protein
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Gene LinkOut

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