U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

plbd2 phospholipase B domain containing 2 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108266423, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
plbd2
Gene description
phospholipase B domain containing 2
See related
Ensembl:ENSIPUG00000000632
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 6 NC_030421.2 (8971651..9009423, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 6 NC_030421.1 (17517514..17547690)

Chromosome 6 - NC_030421.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108266287 Neighboring gene ribosomal RNA processing 1 Neighboring gene leucine rich repeat (in FLII) interacting protein 1a Neighboring gene ribulose-5-phosphate-3-epimerase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
putative phospholipase B-like 2
Names
Putative phospholipase B-like 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030421.2 Reference Coco_2.0 Primary Assembly

    Range
    8971651..9009423 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017469697.3 → XP_017325186.1  putative phospholipase B-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A2D0R560

  2. XM_017469695.3 → XP_017325184.1  putative phospholipase B-like 2 isoform X1

    UniProtKB/TrEMBL
    W5U8Z2
    Related
    ENSIPUP00000000887.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.