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spon2b spondin 2b, extracellular matrix protein [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108268428, updated on 14-Mar-2024

Summary

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Gene symbol
spon2b
Gene description
spondin 2b, extracellular matrix protein
See related
Ensembl:ENSIPUG00000009340
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 8 NC_030423.2 (1471657..1475811, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 8 NC_030423.1 (1314555..1318731, complement)

Chromosome 8 - NC_030423.2Genomic Context describing neighboring genes Neighboring gene probable E3 SUMO-protein ligase RNF212 Neighboring gene transmembrane emp24 protein transport domain containing 9 Neighboring gene Wolfram syndrome 1b (wolframin) Neighboring gene janus kinase and microtubule interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spondin-2b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030423.2 Reference Coco_2.0 Primary Assembly

    Range
    1471657..1475811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017473392.3 → XP_017328881.1  spondin-2b

    UniProtKB/TrEMBL
    A0A2D0RFH6, W5ULI4
    Related
    ENSIPUP00000013670.1
Nucleotide Protein
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