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lgals3b lectin, galactoside binding soluble 3b [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108269434, updated on 14-Mar-2024

Summary

Gene symbol
lgals3b
Gene description
lectin, galactoside binding soluble 3b
See related
Ensembl:ENSIPUG00000001850
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
lgals3
Orthologs
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Genomic context

Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 9 NC_030424.2 (18299586..18304735, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 9 NC_030424.1 (17061080..17066352, complement)

Chromosome 9 - NC_030424.2Genomic Context describing neighboring genes Neighboring gene autophagy related 14 Neighboring gene F-box protein 34 Neighboring gene dishevelled-binding antagonist of beta-catenin 1 Neighboring gene KIAA0586 ortholog Neighboring gene interferon regulatory factor 2 binding protein-like

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables IgE binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in eosinophil chemotaxis IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in macrophage chemotaxis IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in monocyte chemotaxis IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in negative regulation of endocytosis IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in negative regulation of extrinsic apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in neutrophil chemotaxis IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in positive chemotaxis IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in positive regulation of calcium ion import IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in immunological synapse IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030424.2 Reference Coco_2.0 Primary Assembly

    Range
    18299586..18304735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017475309.3XP_017330798.1  galectin-3b

    UniProtKB/TrEMBL
    A0A2D0RJV7
    Related
    ENSIPUP00000002551.1