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sfxn1 sideroflexin 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108275306, updated on 14-Mar-2024

Summary

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Gene symbol
sfxn1
Gene description
sideroflexin 1
See related
Ensembl:ENSIPUG00000011608
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 14 NC_030429.2 (5105999..5127333)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 14 NC_030429.1 (22390410..22412164, complement)

Chromosome 14 - NC_030429.2Genomic Context describing neighboring genes Neighboring gene lysine-specific histone demethylase 2 Neighboring gene cilia- and flagella-associated protein 69 Neighboring gene septin-8-A-like Neighboring gene cyclin G1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in serine import into mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sideroflexin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030429.2 Reference Coco_2.0 Primary Assembly

    Range
    5105999..5127333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017486050.3 → XP_017341539.1  sideroflexin-1

    UniProtKB/TrEMBL
    A0A2D0SFP8
    Related
    ENSIPUP00000017112.1
Nucleotide Protein
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Gene LinkOut

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