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Pcdhb6l protocadherin beta-6-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 108348233, updated on 5-Jan-2022

Summary

Official Symbol
Pcdhb6lprovided by RGD
Official Full Name
protocadherin beta-6-likeprovided by RGD
Primary source
RGD:11376545
See related
Ensembl:ENSRNOG00000020062
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be integral component of plasma membrane. Orthologous to human PCDHB6 (protocadherin beta 6). [provided by Alliance of Genome Resources, Nov 2021]
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Genomic context

See Pcdhb6l in Genome Data Viewer
Location:
18p11
Exon count:
1
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (29144241..29149869)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (30512507..30518524)

Chromosome 18 - NC_051353.1Genomic Context describing neighboring genes Neighboring gene hypothetical LOC100360378 Neighboring gene protocadherin beta 12 Neighboring gene protocadherin beta 14 Neighboring gene 60S ribosomal protein L26-like 1 pseudogene

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051353.1 Reference mRatBN7.2 Primary Assembly

    Range
    29144241..29149869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017601097.2XP_017456586.1  protocadherin beta-6-like

    UniProtKB/TrEMBL
    G3V8N4
    Related
    ENSRNOP00000027172.1, ENSRNOT00000027172.3
    Conserved Domains (3) summary
    cd11304
    Location:246341
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:30111
    Cadherin_2; Cadherin-like
    pfam16492
    Location:686765
    Cadherin_C_2; Cadherin cytoplasmic C-terminal
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