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Pcdhb16l protocadherin beta-16-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 108348771, updated on 5-Jan-2022

Summary

Official Symbol
Pcdhb16lprovided by RGD
Official Full Name
protocadherin beta-16-likeprovided by RGD
Primary source
RGD:11492646
See related
Ensembl:ENSRNOG00000039471
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to be integral component of plasma membrane. Orthologous to human PCDHB16 (protocadherin beta 16). [provided by Alliance of Genome Resources, Nov 2021]
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Genomic context

See Pcdhb16l in Genome Data Viewer
Location:
18p11
Exon count:
3
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (29185405..29195669)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (30560799..30565316)

Chromosome 18 - NC_051353.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L26-like 1 pseudogene Neighboring gene protocadherin beta-7-like Neighboring gene protocadherin beta 17 Neighboring gene protocadherin beta 19 Neighboring gene small nucleolar RNA SNORA31

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
protocadherin beta-13-like; protocadherin beta-16-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051353.1 Reference mRatBN7.2 Primary Assembly

    Range
    29185405..29195669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039097365.1XP_038953293.1  protocadherin beta-13-like isoform X2

    Conserved Domains (3) summary
    cd11304
    Location:248343
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:32113
    Cadherin_2; Cadherin-like
    pfam16492
    Location:687770
    Cadherin_C_2; Cadherin cytoplasmic C-terminal
  2. XM_017601099.2XP_017456588.1  protocadherin beta-16-like isoform X1

    UniProtKB/TrEMBL
    G3V987
    Related
    ENSRNOP00000039238.2, ENSRNOT00000040998.3
    Conserved Domains (3) summary
    cd11304
    Location:246343
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:33112
    Cadherin_2; Cadherin-like
    pfam16492
    Location:687770
    Cadherin_C_2; Cadherin cytoplasmic C-terminal
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