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Ccdc86 coiled-coil domain containing 86 [ Mus musculus (house mouse) ]

Gene ID: 108673, updated on 23-Jun-2021

Summary

Official Symbol
Ccdc86provided by MGI
Official Full Name
coiled-coil domain containing 86provided by MGI
Primary source
MGI:MGI:1277220
See related
Ensembl:ENSMUSG00000024732
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
cyc; D19Ertd678; D19Ertd678e; 4933411H20Rik; 6720480F16Rik
Expression
Ubiquitous expression in adrenal adult (RPKM 9.3), testis adult (RPKM 6.9) and 28 other tissues See more
Orthologs
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Genomic context

See Ccdc86 in Genome Data Viewer
Location:
19 A; 19 7.41 cM
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (10918845..10926630, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (10941481..10949266, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (11015971..11023756, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene pre-mRNA processing factor 19 Neighboring gene zona pellucida glycoprotein 1 Neighboring gene prostaglandin D2 receptor 2 Neighboring gene membrane-spanning 4-domains, subfamily A, member 10 Neighboring gene membrane-spanning 4-domains, subfamily A, member 15

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in chromosome ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
coiled-coil domain-containing protein 86
Names
cyclon
cytokine-induced protein with coiled-coil domain
mCyclon

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_023731.3NP_076220.2  coiled-coil domain-containing protein 86

    See identical proteins and their annotated locations for NP_076220.2

    Status: VALIDATED

    Source sequence(s)
    AC148991, AK036812, AK078455
    Consensus CDS
    CCDS29593.1
    UniProtKB/Swiss-Prot
    Q9JJ89
    Related
    ENSMUSP00000025639.7, ENSMUST00000025639.7
    Conserved Domains (1) summary
    pfam03879
    Location:302388
    Cgr1; Cgr1 family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    10918845..10926630 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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