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Sft2d2 SFT2 domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 108735, updated on 23-Jun-2021

Summary

Official Symbol
Sft2d2provided by MGI
Official Full Name
SFT2 domain containing 2provided by MGI
Primary source
MGI:MGI:1917362
See related
Ensembl:ENSMUSG00000040848
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
cI-4; cI-45; AI506168; AW561909; 2010005O13Rik
Expression
Ubiquitous expression in large intestine adult (RPKM 31.0), genital fat pad adult (RPKM 29.6) and 28 other tissues See more
Orthologs
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Genomic context

See Sft2d2 in Genome Data Viewer
Location:
1; 1 H2.2
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (165001910..165022104, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (165174341..165194522, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (167104472..167124564, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930568G15 gene Neighboring gene T-box 19 Neighboring gene TIP41, TOR signalling pathway regulator-like (S. cerevisiae) Neighboring gene G protein-coupled receptor 161 Neighboring gene DDB1 and CUL4 associated factor 6 Neighboring gene predicted gene, 24637

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
vesicle transport protein SFT2B
Names
SFT2 domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145512.4NP_663487.1  vesicle transport protein SFT2B

    See identical proteins and their annotated locations for NP_663487.1

    Status: VALIDATED

    Source sequence(s)
    AC154142
    Consensus CDS
    CCDS15440.1
    UniProtKB/Swiss-Prot
    Q8VD57
    Related
    ENSMUSP00000043537.5, ENSMUST00000043338.10
    Conserved Domains (1) summary
    pfam04178
    Location:44153
    Got1; Got1/Sft2-like family

RNA

  1. NR_151711.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC154142
  2. NR_151712.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC154142

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    165001910..165022104 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001784762.3 RNA Sequence

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