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rufy3 RUN and FYVE domain containing 3 [ Lates calcarifer (barramundi perch) ]

Gene ID: 108891346, updated on 10-Apr-2024

Summary

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Gene symbol
rufy3
Gene description
RUN and FYVE domain containing 3
See related
EnsemblRapid:ENSLCAG00010024201
Gene type
protein coding
RefSeq status
MODEL
Organism
Lates calcarifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangaria incertae sedis; Centropomidae; Lates
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG13
Exon count:
20
Annotation release Status Assembly LG Location
RS_2023_02 current TLL_Latcal_v3 (GCF_001640805.2) LG13 NC_066845.1 (24214719..24231639)
100 previous assembly ASM164080v1 (GCF_001640805.1) Unplaced Scaffold NW_017364736.1 (189927..206661, complement)

Linkage Group LG13 - NC_066845.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127143208 Neighboring gene solute carrier family 4 member 4a Neighboring gene G-rich RNA sequence binding factor 1 Neighboring gene mitogen-activated protein kinase 1 Neighboring gene yippee-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small-scale transcriptomics reveals differences among gonadal stages in Asian seabass (Lates calcarifer). Ravi P, et al. Reprod Biol Endocrinol, 2014 Jan 9. PMID 24405829, Free PMC Article
  2. Primary analysis of repeat elements of the Asian seabass (Lates calcarifer) transcriptome and genome. Kuznetsova IS, et al. Front Genet, 2014. PMID 25120555, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein RUFY3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001640805.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TLL_Latcal_v3 Primary Assembly

Genomic

  1. NC_066845.1 Reference TLL_Latcal_v3 Primary Assembly

    Range
    24214719..24231639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018688474.2 → XP_018543990.1  protein RUFY3 isoform X1

    UniProtKB/TrEMBL
    A0A4W6FQ47
    Related
    ENSLCAP00010052689.2, ENSLCAT00010054050.2

  2. XM_018688475.2 → XP_018543991.1  protein RUFY3 isoform X2

    UniProtKB/TrEMBL
    A0A4W6FQ47, A0A4W6FQ98
    Related
    ENSLCAP00010052708.1, ENSLCAT00010054069.2

  3. XM_018688478.2 → XP_018543994.1  protein RUFY3 isoform X4

    UniProtKB/TrEMBL
    A0A4W6FPX3

  4. XM_018688476.2 → XP_018543992.1  protein RUFY3 isoform X3

    UniProtKB/TrEMBL
    A0A4W6FPS6
    Related
    ENSLCAP00010052737.1, ENSLCAT00010054099.2

  5. XM_018688479.2 → XP_018543995.1  protein RUFY3 isoform X5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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