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Ms4a7 membrane-spanning 4-domains, subfamily A, member 7 [ Mus musculus (house mouse) ]

Gene ID: 109225, updated on 13-Jul-2021

Summary

Official Symbol
Ms4a7provided by MGI
Official Full Name
membrane-spanning 4-domains, subfamily A, member 7provided by MGI
Primary source
MGI:MGI:1918846
See related
Ensembl:ENSMUSG00000024672
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CFFM; CD20l; CFFMA; CD20l4; 9130422I10Rik; A430103C15Rik
Expression
Broad expression in bladder adult (RPKM 3.2), subcutaneous fat pad adult (RPKM 2.6) and 20 other tissues See more
Orthologs
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Genomic context

See Ms4a7 in Genome Data Viewer
Location:
19; 19 A
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11298403..11313510, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11321039..11336146, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (11395896..11410606, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930526L06 gene Neighboring gene membrane-spanning 4-domains, subfamily A, member 5 Neighboring gene membrane-spanning 4-domains, subfamily A, member 14 Neighboring gene membrane-spanning 4-domains, subfamily A, member 4A Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene Neighboring gene membrane-spanning 4-domains, subfamily A, member 4C

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in trans-Golgi network ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
membrane-spanning 4-domains subfamily A member 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025610.4NP_001020781.1  membrane-spanning 4-domains subfamily A member 7 isoform b

    See identical proteins and their annotated locations for NP_001020781.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 5' exon structure, differs in the 5' UTR, and uses a downstream start codon compared to variant 3. This variant also lacks an alternate in-frame exon in the 5' coding region compared to variant 3. It encodes isoform b, which is shorter and has a distinct N-terminus compared to isoform c.
    Source sequence(s)
    AC134839, AK018686, AK046559, AK079888
    Consensus CDS
    CCDS29597.1
    UniProtKB/TrEMBL
    Q8BV59, Q9D2W6
    Related
    ENSMUSP00000054830.3, ENSMUST00000056035.9
    Conserved Domains (1) summary
    pfam04103
    Location:47185
    CD20; CD20-like family
  2. NM_001276398.1NP_001263327.1  membrane-spanning 4-domains subfamily A member 7 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (c).
    Source sequence(s)
    AC134839, AK079888, AK149890
    Consensus CDS
    CCDS70935.1
    UniProtKB/TrEMBL
    E9Q9V5, Q8BV59, Q99N04
    Related
    ENSMUSP00000025574.5, ENSMUST00000025574.11
    Conserved Domains (1) summary
    pfam04103
    Location:80237
    CD20; CD20-like family
  3. NM_027836.6NP_082112.3  membrane-spanning 4-domains subfamily A member 7 isoform a

    See identical proteins and their annotated locations for NP_082112.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) uses an alternate 5' exon structure, differs in the 5' UTR and uses a downstream start codon compared to variant 3. It encodes isoform a which is shorter than isoform c.
    Source sequence(s)
    AC134839, AK046559, AK079888, AK151261
    Consensus CDS
    CCDS29598.1
    UniProtKB/TrEMBL
    Q3UAR5, Q8BV59, Q99N04
    Related
    ENSMUSP00000064534.5, ENSMUST00000067532.11
    Conserved Domains (1) summary
    pfam04103
    Location:47204
    CD20; CD20-like family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    11298403..11313510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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