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Lmo3 LIM domain only 3 [ Mus musculus (house mouse) ]

Gene ID: 109593, updated on 16-Oct-2021

Summary

Official Symbol
Lmo3provided by MGI
Official Full Name
LIM domain only 3provided by MGI
Primary source
MGI:MGI:102810
See related
Ensembl:ENSMUSG00000030226
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Lmo-3; Rbtn3; Rbtn-3; AI854781; BB106490
Expression
Biased expression in CNS E18 (RPKM 16.5), frontal lobe adult (RPKM 10.9) and 4 other tissues See more
Orthologs
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Genomic context

See Lmo3 in Genome Data Viewer
Location:
6 G1; 6 69.02 cM
Exon count:
15
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (138339916..138559204, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (138362918..138582206, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (138313002..138530489, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene microsomal glutathione S-transferase 1 Neighboring gene predicted gene, 30213 Neighboring gene RIKEN cDNA A830011K09 gene Neighboring gene predicted gene, 30332 Neighboring gene RIKEN cDNA B230110G15 gene Neighboring gene immunoglobulin (CD79A) binding protein 1b Neighboring gene protein inhibitor of activated STAT 2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
LIM domain only protein 3
Names
LIM only 3
neuronal-specific transcription factor DAT1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356305.1NP_001343234.1  LIM domain only protein 3 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC121968, AC125215
    Consensus CDS
    CCDS20669.1
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  2. NM_001356306.1NP_001343235.1  LIM domain only protein 3 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC121968, AC125215
    Consensus CDS
    CCDS20669.1
    Related
    ENSMUSP00000125589.2, ENSMUST00000163024.8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  3. NM_001356307.1NP_001343236.1  LIM domain only protein 3 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC121968, AC125215
    Consensus CDS
    CCDS90132.1
    Related
    ENSMUSP00000124762.2, ENSMUST00000163065.8
    Conserved Domains (2) summary
    cd09388
    Location:2478
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:88142
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  4. NM_207222.3NP_997105.1  LIM domain only protein 3 isoform 1

    See identical proteins and their annotated locations for NP_997105.1

    Status: VALIDATED

    Source sequence(s)
    AC121968, AC125215, AC139755
    Consensus CDS
    CCDS20669.1
    UniProtKB/Swiss-Prot
    Q8BZL8
    Related
    ENSMUSP00000125335.2, ENSMUST00000162772.8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

RNA

  1. NR_151448.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC121968, AC125215
  2. NR_151449.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC121968, AC125215

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    138339916..138559204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030255087.1XP_030110947.1  LIM domain only protein 3 isoform X2

    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  2. XM_011241131.2XP_011239433.1  LIM domain only protein 3 isoform X2

    See identical proteins and their annotated locations for XP_011239433.1

    UniProtKB/Swiss-Prot
    Q8BZL8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  3. XM_006505341.4XP_006505404.1  LIM domain only protein 3 isoform X2

    See identical proteins and their annotated locations for XP_006505404.1

    UniProtKB/Swiss-Prot
    Q8BZL8
    Related
    ENSMUSP00000145048.2, ENSMUST00000203435.3
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  4. XM_011241132.4XP_011239434.1  LIM domain only protein 3 isoform X2

    See identical proteins and their annotated locations for XP_011239434.1

    UniProtKB/Swiss-Prot
    Q8BZL8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  5. XM_017321313.3XP_017176802.1  LIM domain only protein 3 isoform X2

    UniProtKB/Swiss-Prot
    Q8BZL8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  6. XM_006505340.3XP_006505403.1  LIM domain only protein 3 isoform X2

    See identical proteins and their annotated locations for XP_006505403.1

    UniProtKB/Swiss-Prot
    Q8BZL8
    Related
    ENSMUSP00000124862.2, ENSMUST00000161450.8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  7. XM_011241133.4XP_011239435.1  LIM domain only protein 3 isoform X2

    See identical proteins and their annotated locations for XP_011239435.1

    UniProtKB/Swiss-Prot
    Q8BZL8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  8. XM_036165744.1XP_036021637.1  LIM domain only protein 3 isoform X2

    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  9. XM_036165743.1XP_036021636.1  LIM domain only protein 3 isoform X1

    Conserved Domains (2) summary
    cd09388
    Location:4094
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:104158
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  10. XM_006505342.2XP_006505405.1  LIM domain only protein 3 isoform X2

    See identical proteins and their annotated locations for XP_006505405.1

    UniProtKB/Swiss-Prot
    Q8BZL8
    Conserved Domains (2) summary
    cd09388
    Location:1367
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cd09389
    Location:77131
    LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
  11. XM_006505343.5XP_006505406.1  LIM domain only protein 3 isoform X3

    Conserved Domains (2) summary
    cd09388
    Location:4094
    LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    cl02475
    Location:104139
    LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

RNA

  1. XR_377405.5 RNA Sequence

  2. XR_868844.4 RNA Sequence

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