U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Tpcn1 two pore segment channel 1 [ Castor canadensis (American beaver) ]

Gene ID: 109681964, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Tpcn1
Gene description
two pore segment channel 1
See related
Ensembl:ENSCCNG00000009713
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Tpcn1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017869938.1 (92585..145418, complement)

NW_017869938.1Genomic Context describing neighboring genes Neighboring gene phospholipase B domain containing 2 Neighboring gene solute carrier family 8 member B1 Neighboring gene IQ motif containing D Neighboring gene RBPJ interacting and tubulin associated 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_017869938.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
two pore calcium channel protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017869938.1 Reference C.can genome v1.0

    Range
    92585..145418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020156931.1 → XP_020012520.1  two pore calcium channel protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A250YLB5, A0A8B7U4A6
    Conserved Domains (2) summary
    pfam00520
    Location:4 → 182
    Ion_trans; Ion transport protein
    pfam12325
    Location:561 → 631
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding

  2. XM_020156930.1 → XP_020012519.1  two pore calcium channel protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A250YLB5, A0A8B7TYJ9
    Related
    ENSCCNP00000009182.1, ENSCCNT00000012101.1
    Conserved Domains (2) summary
    pfam00520
    Location:143 → 331
    Ion_trans; Ion transport protein
    pfam12325
    Location:710 → 780
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.