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Tsc22d3 TSC22 domain family member 3 [ Castor canadensis (American beaver) ]

Gene ID: 109701287, updated on 14-Mar-2024

Summary

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Gene symbol
Tsc22d3
Gene description
TSC22 domain family member 3
See related
Ensembl:ENSCCNG00000023877
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017873164.1 (57105..116942, complement)

NW_017873164.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017873164.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Genome and Transcriptome Assembly of the Canadian Beaver (Castor canadensis). Lok S, et al. G3 (Bethesda), 2017 Feb 9. PMID 28087693, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TSC22 domain family protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017873164.1 Reference C.can genome v1.0

    Range
    57105..116942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020186770.1 → XP_020042359.1  TSC22 domain family protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0XJY7
    Conserved Domains (2) summary
    pfam01166
    Location:124 → 179
    TSC22; TSC-22/dip/bun family
    cl27055
    Location:63 → 153
    MutS_III; MutS domain III

  2. XM_020186769.1 → XP_020042358.1  TSC22 domain family protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0XJY7
    Related
    ENSCCNP00000024379.1, ENSCCNT00000031088.1
    Conserved Domains (2) summary
    pfam01166
    Location:124 → 179
    TSC22; TSC-22/dip/bun family
    cl27055
    Location:63 → 153
    MutS_III; MutS domain III

  3. XM_020186768.1 → XP_020042357.1  TSC22 domain family protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0XJY7
    Related
    ENSCCNP00000024378.1, ENSCCNT00000031086.1
    Conserved Domains (2) summary
    pfam01166
    Location:124 → 179
    TSC22; TSC-22/dip/bun family
    cl27055
    Location:63 → 153
    MutS_III; MutS domain III

  4. XM_020186771.1 → XP_020042360.1  TSC22 domain family protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A250Y9T1
    Related
    ENSCCNP00000024382.1, ENSCCNT00000031091.1
    Conserved Domains (1) summary
    pfam01166
    Location:58 → 113
    TSC22; TSC-22/dip/bun family
Nucleotide Protein
Heading Accession and Version

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