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PKD1P3-NPIPA1 PKD1P3-NPIPA1 readthrough [ Homo sapiens (human) ]

Gene ID: 109951030, updated on 24-Jul-2021

Summary

Gene symbol
PKD1P3-NPIPA1
Gene description
PKD1P3-NPIPA1 readthrough
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents naturally-occurring readthrough transcription between an unprocessed pseudogene, PKD1P3 (polycystin 1, transient receptor potential channel interacting pseudogene 3) and a protein-coding gene, NPIPA1 (nuclear pore complex interacting protein family member A1). Readthrough transcripts include regions of similarity to both gene families and are unlikely to be translated into functional proteins. [provided by RefSeq, Mar 2017]
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Genomic context

See PKD1P3-NPIPA1 in Genome Data Viewer
Location:
16p13.11
Exon count:
39
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (14911762..14952060)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (15005619..15045917)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927469 Neighboring gene microRNA 3670-1 Neighboring gene microRNA 3180-1 Neighboring gene uncharacterized LOC100288162 Neighboring gene microRNA 6511a-1 Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 3 Neighboring gene microRNA 6770-1 Neighboring gene nuclear pore complex interacting protein family member A1 Neighboring gene pyridoxal dependent decarboxylase domain containing 1 Neighboring gene KIAA2013 pseudogene Neighboring gene microRNA 1972-1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146231.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138932, AI124816, AK160377, CN268809, CN279145, CN418455, HX785643, HY077493

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    14911762..14952060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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