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LOC110120623 VISTA enhancer hs241 [ Homo sapiens (human) ]

Gene ID: 110120623, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120623
Gene description
VISTA enhancer hs241
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120623 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (10905072..10906087)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (10448977..10449991)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (10965129..10966144)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376733 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10874119-10874619 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10876704-10877204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10884509-10885026 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10885027-10885544 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:10886063-10886578 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:10898203-10898810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10899993-10900493 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10920607-10921107 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10921487-10921988 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10927921-10928792 Neighboring gene heat shock protein family E (Hsp10) member 1 pseudogene 24 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10969040-10969771 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10969934-10970926 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10972135-10972636 Neighboring gene uncharacterized LOC105376735 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10994223-10995188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10995189-10996154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:10997150-10997734 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 155 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 256 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:11001673-11002238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:11002239-11002802 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:11005721-11006524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:11008047-11008548 Neighboring gene chromosome 1 open reading frame 127 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:11018518-11019287 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:11020057-11020826 Neighboring gene Sharpr-MPRA regulatory region 3012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 156 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 157 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 257

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053250.1 

    Range
    101..1116
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    10905072..10906087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    10448977..10449991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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