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LOC110120629 VISTA enhancer hs249 [ Homo sapiens (human) ]

Gene ID: 110120629, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120629
Gene description
VISTA enhancer hs249
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (236162720..236163204)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (236652447..236652931)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (237071364..237071848)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236950015-236950927 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236950928-236951839 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236953845-236954624 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236954625-236955404 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236955459-236955962 Neighboring gene VISTA enhancer hs921 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236970128-236970759 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236970760-236971390 Neighboring gene RNA, U7 small nuclear 127 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:236979819-236980320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236982603-236983103 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236984110-236984614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236991437-236991936 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236995415-236996056 Neighboring gene RNA, 7SL, cytoplasmic 204, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237014597-237015120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237015121-237015644 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237017217-237017740 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237017741-237018264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237028027-237028769 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237028770-237029512 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237035362-237035872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237037456-237038393 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237045311-237045811 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237044810-237045310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237064500-237065288 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237067303-237068123 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237068124-237068944 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237068945-237069764 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237069765-237070586 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237070587-237071406 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237072227-237073046 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237075208-237076160 Neighboring gene uncharacterized LOC124906126 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237081261-237082048 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237082049-237082834 Neighboring gene Sharpr-MPRA regulatory region 4909 Neighboring gene Sharpr-MPRA regulatory region 229 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237087965-237088482 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237088483-237088998 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:237116979-237117150 Neighboring gene GBX2 and ASB18 antisense RNA 1 Neighboring gene gastrulation brain homeobox 2 Neighboring gene RNA, U1 small nuclear 31, pseudogene Neighboring gene ankyrin repeat and SOCS box containing 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053256.1 

    Range
    101..585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    236162720..236163204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    236652447..236652931
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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