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LOC110121025 VISTA enhancer hs1202 [ Homo sapiens (human) ]

Gene ID: 110121025, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121025
Gene description
VISTA enhancer hs1202
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (164634904..164636237)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (163981154..163982487)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (164604141..164605474)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene high mobility group box 3 pseudogene 6 Neighboring gene uncharacterized LOC124904759 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:164528003-164528502 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:164559870-164560837 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:164561919-164562862 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:164571452-164572217 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:164572218-164572982 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:164578838-164579391 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:164579392-164579944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:164580135-164580676 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:164581761-164582300 Neighboring gene hESC enhancers GRCh37_chr1:164581219-164581760 and GRCh37_chr1:164581219-164581760 Neighboring gene PBX homeobox 1 Neighboring gene VISTA enhancer hs1235 Neighboring gene RNA, U6 small nuclear 171, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:164660437-164660937 Neighboring gene VISTA enhancer hs1144 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1496 Neighboring gene Sharpr-MPRA regulatory region 1770 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:164704495-164705047 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:164717166-164718365 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:164728525-164729026 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:164729027-164729526 Neighboring gene PBX1 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053646.1 

    Range
    101..1434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    164634904..164636237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    163981154..163982487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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