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LOC110121063 VISTA enhancer hs1331 [ Homo sapiens (human) ]

Gene ID: 110121063, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121063
Gene description
VISTA enhancer hs1331
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110121063 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (167327717..167329809)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (166679114..166681206)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (167296954..167299046)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2035 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1519 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1520 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1521 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1522 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2036 Neighboring gene POU2F1 divergent transcript Neighboring gene uncharacterized LOC124900412 Neighboring gene POU class 2 homeobox 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2037 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2038 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:167269998-167270202 Neighboring gene MPRA-validated peak441 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:167393486-167394456 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:167394457-167395427 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:167399000-167399906 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:167399907-167400813 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1524 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1525 Neighboring gene uncharacterized LOC101928512 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1526 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1527 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1528 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1529 Neighboring gene CD247 molecule Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:167455187-167455767 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:167472740-167473240 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:167486398-167487597 Neighboring gene uncharacterized LOC107985224 Neighboring gene aldo-keto reductase family 1 member D1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053683.1 

    Range
    101..2193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    167327717..167329809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    166679114..166681206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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