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LOC110121101 VISTA enhancer hs1432 [ Homo sapiens (human) ]

Gene ID: 110121101, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121101
Gene description
VISTA enhancer hs1432
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (82023063..82025864)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (82507718..82510519)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (81318882..81321683)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901018 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:81196818-81197416 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:81197417-81198014 Neighboring gene SEM1 pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:81267375-81267932 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:81267933-81268488 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:81275893-81276450 Neighboring gene Sharpr-MPRA regulatory region 409 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:81278679-81279234 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:81278121-81278678 Neighboring gene autophagy related 10 Neighboring gene peptidylprolyl isomerase A pseudogene 11 Neighboring gene RNA, 7SL, cytoplasmic 378, pseudogene Neighboring gene Sharpr-MPRA regulatory region 9633 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22735 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:81569855-81570549 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:81570550-81571243 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22736 Neighboring gene ribosomal protein S23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053720.1 

    Range
    101..2902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    82023063..82025864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    82507718..82510519
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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