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LOC110121259 VISTA enhancer hs2100 [ Homo sapiens (human) ]

Gene ID: 110121259, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121259
Gene description
VISTA enhancer hs2100
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (148052009..148056122)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (151375934..151380047)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (148973160..148977273)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:148741752-148742252 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:148742253-148742753 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:148752558-148753757 Neighboring gene RNA, 7SL, cytoplasmic 254, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22011 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:148787949-148788626 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:148788627-148789303 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:148854887-148855386 Neighboring gene ret finger protein like 4A pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22012 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:149011589-149012238 Neighboring gene nuclear receptor subfamily 3 group C member 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:149113429-149114628 Neighboring gene uncharacterized LOC102724672 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:149244835-149245396 Neighboring gene MPRA-validated peak5133 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15744 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22013 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15745 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15746 Neighboring gene uncharacterized LOC124900798

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053874.1 

    Range
    101..4214
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    148052009..148056122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    151375934..151380047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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