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LOC110121358 VISTA enhancer hs1392 [ Homo sapiens (human) ]

Gene ID: 110121358, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121358
Gene description
VISTA enhancer hs1392
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 14
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (68168126..68169343)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (62374509..62375726)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (68634843..68636060)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene RAD51 paralog B Neighboring gene centrosomal protein 170kDa pseudogene Neighboring gene uncharacterized LOC105370546 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr14:68604367-68605351 Neighboring gene RNA, 7SL, cytoplasmic 706, pseudogene Neighboring gene Sharpr-MPRA regulatory region 3110 Neighboring gene MPRA-validated peak2183 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8590 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:68698864-68700063 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8592 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8594 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8593 Neighboring gene RNA, 7SL, cytoplasmic 108, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8595 Neighboring gene Sharpr-MPRA regulatory region 2611 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8596 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8597 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8598 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8599 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8600 Neighboring gene Sharpr-MPRA regulatory region 10624 Neighboring gene Sharpr-MPRA regulatory region 2571 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8603 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8605 Neighboring gene ribosomal protein L7a pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053972.1 

    Range
    101..1318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    68168126..68169343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    62374509..62375726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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