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LOC110121450 VISTA enhancer hs1854 [ Homo sapiens (human) ]

Gene ID: 110121450, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121450
Gene description
VISTA enhancer hs1854
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110121450 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (88990989..88994615)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (95068702..95072329)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (89057397..89061023)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene CBFA2/RUNX1 partner transcriptional co-repressor 3 Neighboring gene uncharacterized LOC107984871 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11377 Neighboring gene uncharacterized LOC100129697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7885 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7886 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7887 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7888 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7889 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:89023211-89023356 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11378 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7890 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11379 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89035421-89036276 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11380 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11381 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11382 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89041740-89042284 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11384 Neighboring gene uncharacterized LOC124903756 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:89048580-89048782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89049867-89050367 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89067412-89067972 Neighboring gene GATA motif-containing MPRA enhancer 137 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11386 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11387 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11388 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7891 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11389 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11390 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:89100847-89101733 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:89103856-89104363 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11391 Neighboring gene uncharacterized LOC105371411 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11392 Neighboring gene uncharacterized LOC105371412

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054063.1 

    Range
    101..3727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    88990989..88994615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    95068702..95072329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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