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gm2a ganglioside GM2 activator [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110489218, updated on 15-Mar-2024

Summary

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Gene symbol
gm2a
Gene description
ganglioside GM2 activator
See related
Ensembl:ENSOMYG00000037055
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 14 NC_048578.1 (34914060..34921098, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 14 NC_035090.1 (76212852..76220013)

Chromosome 14 - NC_048578.1Genomic Context describing neighboring genes Neighboring gene homeobox protein EMX1-like Neighboring gene uncharacterized LOC118938728 Neighboring gene coiled-coil domain containing 69 Neighboring gene protocadherin Fat 2 Neighboring gene uncharacterized LOC118938729 Neighboring gene proton-coupled amino acid transporter 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EST analysis on adipose tissue of rainbow trout Oncorhynchus mykiss and tissue distribution of adiponectin. Kondo H, et al. Gene, 2011 Oct 1. PMID 21712077

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ganglioside GM2 activator
Names
GM2 ganglioside activator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048578.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    34914060..34921098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021561850.2 → XP_021417525.2  ganglioside GM2 activator

    UniProtKB/TrEMBL
    A0A060Y722, A0A8C7TM91
    Related
    ENSOMYP00000081148.2, ENSOMYT00000088427.2
    Conserved Domains (1) summary
    cl00274
    Location:37 → 196
    ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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