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Pwp2 PWP2 periodic tryptophan protein homolog (yeast) [ Mus musculus (house mouse) ]

Gene ID: 110816, updated on 16-Oct-2021

Summary

Official Symbol
Pwp2provided by MGI
Official Full Name
PWP2 periodic tryptophan protein homolog (yeast)provided by MGI
Primary source
MGI:MGI:1341200
See related
Ensembl:ENSMUSG00000032834
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pwp2h; wdp103; 6530411D08Rik
Expression
Ubiquitous expression in ovary adult (RPKM 6.6), CNS E18 (RPKM 6.0) and 28 other tissues See more
Orthologs
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Genomic context

See Pwp2 in Genome Data Viewer
Location:
10 C1; 10 39.72 cM
Exon count:
21
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (78006743..78021005, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (78170909..78185171, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (77633655..77647894, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 47922 Neighboring gene glutamine amidotransferase like class 1 domain containing 3A Neighboring gene trafficking protein particle complex 10 Neighboring gene predicted gene, 30122

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC117973

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in ribosomal small subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
periodic tryptophan protein 2 homolog
Names
WD-repeat protein p103

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029546.2NP_083822.1  periodic tryptophan protein 2 homolog

    See identical proteins and their annotated locations for NP_083822.1

    Status: PROVISIONAL

    Source sequence(s)
    AK088254
    Consensus CDS
    CCDS35958.1
    UniProtKB/Swiss-Prot
    Q8BU03
    UniProtKB/TrEMBL
    Q2M1K2
    Related
    ENSMUSP00000045812.10, ENSMUST00000042556.11
    Conserved Domains (5) summary
    COG2319
    Location:277643
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:322629
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam04003
    Location:771873
    Utp12; Dip2/Utp12 Family
    sd00039
    Location:333371
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:20401
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    78006743..78021005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001779417.1 RNA Sequence

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