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D17H6S56E-5 DNA segment, Chr 17, human D6S56E 5 [ Mus musculus (house mouse) ]

Gene ID: 110956, updated on 8-Feb-2024

Summary

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Official Symbol
D17H6S56E-5provided by MGI
Official Full Name
DNA segment, Chr 17, human D6S56E 5provided by MGI
Primary source
MGI:MGI:1306799
See related
Ensembl:ENSMUSG00000120992 AllianceGenome:MGI:1306799
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
G7e
Summary
Is expressed in genitourinary system; hemolymphoid system; and lung. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in liver E14 (RPKM 34.6), liver E14.5 (RPKM 30.5) and 20 other tissues See more
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Genomic context

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See D17H6S56E-5 in Genome Data Viewer
Location:
17 B1; 17 18.54 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (35215654..35219722, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (34996678..35000774, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene heat shock protein 1-like Neighboring gene LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene STARR-positive B cell enhancer ABC_E1941 Neighboring gene STARR-positive B cell enhancer ABC_E7526 Neighboring gene valyl-tRNA synthetase 1 Neighboring gene von Willebrand factor A domain containing 7 Neighboring gene suppressor APC domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A novel locus affecting serum levels of IgG2a maps to the murine H2 region. Matthews VB, et al. Eur J Immunogenet, 2000 Jun. PMID 10940081
  2. The sequence and organization of the mouse valyl-tRNA synthetase gene G7a/Bat6 located in the MHC class III region. Snoek M, et al. Immunogenetics, 1999 May. PMID 10199925
  3. A gene belonging to the Sm family of snRNP core proteins maps within the mouse MHC. Bedian V, et al. Immunogenetics, 1997. PMID 9271633
  4. A novel gene, G7e, resembling a viral envelope gene, is located at the recombinational hot spot in the class III region of the mouse MHC. Snoek M, et al. Genomics, 1996 Nov 15. PMID 8954773
  5. Coding sequences and levels of expression of Hsc70t are identical in mice with different Orch-1 alleles. Snoek M, et al. Immunogenetics, 1994. PMID 8026864

See all (28) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

General protein information

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Preferred Names
MLV-related proviral Env polyprotein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_033075.3 → NP_149066.2  MLV-related proviral Env polyprotein-like

    See identical proteins and their annotated locations for NP_149066.2

    Status: VALIDATED

    Source sequence(s)
    AC087117, AK075966
    UniProtKB/TrEMBL
    P97406, Q8R067, Q91UZ6
    Related
    ENSMUST00000247011.1
    Conserved Domains (2) summary
    cd09851
    Location:460 → 537
    HTLV-1-like_HR1-HR2; heptad repeat 1-heptad repeat 2 region (ectodomain) of the transmembrane subunit of human T-cell leukemia virus type 1 (HTLV-1), and related domains
    pfam00429
    Location:38 → 573
    TLV_coat; ENV polyprotein (coat polyprotein)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    35215654..35219722 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317209.3 → XP_017172698.1  MLV-related proviral Env polyprotein-like isoform X1

    UniProtKB/TrEMBL
    P97406, Q8R067
    Related
    ENSMUST00000247403.1
    Conserved Domains (1) summary
    pfam00429
    Location:26 → 561
    TLV_coat; ENV polyprotein (coat polyprotein)
Nucleotide Protein Strain
Heading Accession and Version

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