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Dlx1as distal-less homeobox 1, antisense [ Mus musculus (house mouse) ]

Gene ID: 111970, updated on 8-Feb-2024

Summary

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Official Symbol
Dlx1asprovided by MGI
Official Full Name
distal-less homeobox 1, antisenseprovided by MGI
Primary source
MGI:MGI:1195983
See related
Ensembl:ENSMUSG00000084946 AllianceGenome:MGI:1195983
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Dix1as; Dlx1os
Summary
Acts upstream of or within embryonic cranial skeleton morphogenesis. Is expressed in several structures, including brain and branchial arch. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in whole brain E14.5 (RPKM 30.7), CNS E14 (RPKM 27.3) and 4 other tissues See more
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Genomic context

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Location:
2 C2; 2 42.58 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (71360982..71368235, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (71530638..71537891, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene histone aminotransferase 1 Neighboring gene VISTA enhancer mm55 Neighboring gene nuclear protein-NHP2-like protein pseudogene Neighboring gene methionyl aminopeptidase type 1D (mitochondrial) Neighboring gene STARR-seq mESC enhancer starr_04791 Neighboring gene STARR-seq mESC enhancer starr_04792 Neighboring gene distal-less homeobox 1 Neighboring gene STARR-seq mESC enhancer starr_04793 Neighboring gene distal-less homeobox 2 Neighboring gene STARR-positive B cell enhancer mm9_chr2:71436893-71437193 Neighboring gene predicted gene, 36857

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Long noncoding RNAs related to the odontogenic potential of dental mesenchymal cells in mice. Zheng Y, et al. Arch Oral Biol, 2016 Jul. PMID 26986487
  2. Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo. Ramos AD, et al. Cell Stem Cell, 2013 May 2. PMID 23583100, Free PMC Article
  3. Sequence, organization, and transcription of the Dlx-1 and Dlx-2 locus. McGuinness T, et al. Genomics, 1996 Aug 1. PMID 8812481
  4. Dlx genes encode DNA-binding proteins that are expressed in an overlapping and sequential pattern during basal ganglia differentiation. Liu JK, et al. Dev Dyn, 1997 Dec. PMID 9415433
  5. Evf2 lncRNA/BRG1/DLX1 interactions reveal RNA-dependent inhibition of chromatin remodeling. Cajigas I, et al. Development, 2015 Aug 1. PMID 26138476, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Other Names

  • Dlx1 antisense
  • distal-less homeobox 1, opposite strand

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within embryonic cranial skeleton morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002854.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK132348
    Related
    ENSMUST00000137251.4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    71360982..71368235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases