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syt3 synaptotagmin III [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112146922, updated on 15-Mar-2024

Summary

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Gene symbol
syt3
Gene description
synaptotagmin III
See related
Ensembl:ENSOMEG00000018514
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG8
Exon count:
13
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG8 NC_050519.1 (3035159..3096930, complement)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096082.1 (20652531..20714303)

Linkage Group LG8 - NC_050519.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 4Ba Neighboring gene uncharacterized LOC112146282 Neighboring gene mediator complex subunit 25 Neighboring gene uncharacterized LOC112146925 Neighboring gene protein kinase C and casein kinase II substrate protein 3 Neighboring gene uncharacterized LOC112146924 Neighboring gene small nucleolar RNA SNORD88 Neighboring gene small nucleolar RNA SNORD88

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-ion regulated exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of calcium ion-dependent exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dopamine secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050519.1 Reference ASM292280v2 Primary Assembly

    Range
    3035159..3096930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024272990.2 → XP_024128758.1  synaptotagmin-C

    UniProtKB/TrEMBL
    A0A3B3DSG2
    Conserved Domains (2) summary
    cd08385
    Location:263 → 388
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08403
    Location:397 → 530
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

  2. XM_024272989.2 → XP_024128757.1  synaptotagmin-C

    UniProtKB/TrEMBL
    A0A3B3DSG2
    Related
    ENSOMEP00000032856.1
    Conserved Domains (2) summary
    cd08385
    Location:263 → 388
    C2A_Synaptotagmin-1-5-6-9-10; C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10
    cd08403
    Location:397 → 530
    C2B_Synaptotagmin-3-5-6-9-10; C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10
Nucleotide Protein Strain
Heading Accession and Version

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