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KCNQ5-DT KCNQ5 divergent transcript [ Homo sapiens (human) ]

Gene ID: 112267960, updated on 10-Oct-2023

Summary

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Official Symbol
KCNQ5-DTprovided by HGNC
Official Full Name
KCNQ5 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55469
See related
AllianceGenome:HGNC:55469
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
6q13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (72614360..72622679, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (73791012..73799331, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene DNA polymerase delta 1, catalytic subunit pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24737 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17329 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:73332477-73333428 Neighboring gene HORMA domain containing 1 pseudogene Neighboring gene KCNQ5 intronic transcript 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17331 Neighboring gene potassium voltage-gated channel subfamily Q member 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24738 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24739 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24740 Neighboring gene uncharacterized LOC124901340

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Functional annotation of human long noncoding RNAs via molecular phenotyping. Ramilowski JA, et al. Genome Res, 2020 Jul. PMID 32718982, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

General gene information

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Other Names

  • CATG00000088862.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186827.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FO393414

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    72614360..72622679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    73791012..73799331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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