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LOC112268055 uncharacterized LOC112268055 [ Homo sapiens (human) ]

Gene ID: 112268055, updated on 10-Oct-2023

Summary

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Gene symbol
LOC112268055
Gene description
uncharacterized LOC112268055
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
9q33.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (125421334..125436847)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (137620547..137636062)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene GTPase activating protein and VPS9 domains 1 Neighboring gene RNA, U6 small nuclear 1020, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr9:128115126-128115299 Neighboring gene Sharpr-MPRA regulatory region 13338 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128133357-128133857 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:128152293-128153032 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:128169974-128170568 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29002 Neighboring gene uncharacterized LOC101929014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128186118-128186618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128194217-128194791 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128207611-128208110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128207109-128207610 Neighboring gene NANOG hESC enhancer GRCh37_chr9:128208606-128209135 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128209344-128209872 Neighboring gene RNA, U5B small nuclear 5, pseudogene Neighboring gene MAPK associated protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128242575-128243076 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:128243077-128243576 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:128243732-128243912 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:128246700-128246866 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:128257291-128258078 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29004 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29005 Neighboring gene Sharpr-MPRA regulatory region 1305 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29006 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29007 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29008 Neighboring gene RNA, 7SL, cytoplasmic 30, pseudogene Neighboring gene uncharacterized LOC124902270

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    125421334..125436847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002956935.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    137620547..137636062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080008.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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