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LOC112268114 uncharacterized LOC112268114 [ Homo sapiens (human) ]

Gene ID: 112268114, updated on 10-Oct-2023

Summary

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Gene symbol
LOC112268114
Gene description
uncharacterized LOC112268114
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
13q32.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (94712720..94713443, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (93916225..93916948, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (95364974..95365697, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:95353695-95354372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:95354373-95355048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:95357234-95357738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:95357739-95358243 Neighboring gene VISTA enhancer hs488 Neighboring gene long intergenic non-protein coding RNA 391 Neighboring gene RNA, 7SL, cytoplasmic 585, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:95365523-95366024 Neighboring gene SOX21 antisense divergent transcript 1 Neighboring gene SRY-box transcription factor 21 Neighboring gene uncharacterized LOC101927284 Neighboring gene ribosomal protein L21 pseudogene 112 Neighboring gene bromodomain containing 7 pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_158368.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BM783259

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    94712720..94713443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    93916225..93916948 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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