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LOC112268136 uncharacterized LOC112268136 [ Homo sapiens (human) ]

Gene ID: 112268136, updated on 10-Oct-2023

Summary

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Gene symbol
LOC112268136
Gene description
uncharacterized LOC112268136
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC112268136 in Genome Data Viewer
Location:
14q21.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (38256045..38311930)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (32444735..32500591)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (38725250..38781134)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370456 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:38473631-38474167 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:38658931-38659920 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:38659921-38660910 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:38664869-38665857 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:38668032-38668532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:38668533-38669033 Neighboring gene Sharpr-MPRA regulatory region 1824 Neighboring gene uncharacterized LOC124903303 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:38676911-38677572 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:38678556-38679259 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:38679260-38679962 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:38691195-38691719 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:38724480-38725107 Neighboring gene somatostatin receptor 1 Neighboring gene C-type lectin domain containing 14A Neighboring gene ReSE screen-validated silencer GRCh37_chr14:38824709-38824949 Neighboring gene uncharacterized LOC124903304 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:38951414-38952613 Neighboring gene NANOG hESC enhancer GRCh37_chr14:39005847-39006348 Neighboring gene NANOG hESC enhancer GRCh37_chr14:39045388-39045889 Neighboring gene general transcription factor IIH subunit 3 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_169588.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL161751

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    38256045..38311930
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    32444735..32500591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases