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LOC112296087 RNA-dependent RNA polymerase 6-like [ Physcomitrium patens ]

Gene ID: 112296087, updated on 9-Nov-2023

Summary

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Gene symbol
LOC112296087
Gene description
RNA-dependent RNA polymerase 6-like
Locus tag
PHYPA_024237
Gene type
protein coding
RefSeq status
MODEL
Organism
Physcomitrium patens
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium
Also known as
RDR6
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Genomic context

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See LOC112296087 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Phypa V3 (GCF_000002425.4) 19 NC_037271.1 (11117846..11124919)

Chromosome 19 - NC_037271.1Genomic Context describing neighboring genes Neighboring gene centrosomal protein of 63 kDa-like Neighboring gene vegetative cell wall protein gp1-like Neighboring gene ubiquitin carboxyl-terminal hydrolase 14-like Neighboring gene protein SUPPRESSOR OF FRI 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037271.1 Chromosome 19 Reference Phypa V3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of trans-acting siRNAs in moss and an RNA-dependent RNA polymerase required for their biogenesis. Talmor-Neiman M, et al. Plant J, 2006 Nov. PMID 17076803

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA-dependent RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in siRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear RNA-directed RNA polymerase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-dependent RNA polymerase 6-like
Names
putative RNA-dependent RNA polymerase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Physcomitrella patens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Phypa V3 Primary Assembly

Genomic

  1. NC_037271.1 Reference Phypa V3 Primary Assembly

    Range
    11117846..11124919
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024548236.1 → XP_024404004.1  RNA-dependent RNA polymerase 6-like isoform X1

    UniProtKB/TrEMBL
    A0MD71
    Conserved Domains (2) summary
    cd00590
    Location:6 → 75
    RRM_SF; RNA recognition motif (RRM) superfamily
    pfam05183
    Location:380 → 957
    RdRP; RNA dependent RNA polymerase

  2. XM_024548239.1 → XP_024404007.1  RNA-dependent RNA polymerase 6-like isoform X2

    Conserved Domains (1) summary
    pfam05183
    Location:238 → 815
    RdRP; RNA dependent RNA polymerase

  3. XM_024548238.1 → XP_024404006.1  RNA-dependent RNA polymerase 6-like isoform X1

    UniProtKB/TrEMBL
    A0MD71
    Conserved Domains (2) summary
    cd00590
    Location:6 → 75
    RRM_SF; RNA recognition motif (RRM) superfamily
    pfam05183
    Location:380 → 957
    RdRP; RNA dependent RNA polymerase

  4. XM_024548244.1 → XP_024404012.1  RNA-dependent RNA polymerase 6-like isoform X2

    Conserved Domains (1) summary
    pfam05183
    Location:238 → 815
    RdRP; RNA dependent RNA polymerase

  5. XM_024548234.1 → XP_024404002.1  RNA-dependent RNA polymerase 6-like isoform X1

    UniProtKB/TrEMBL
    A0MD71
    Conserved Domains (2) summary
    cd00590
    Location:6 → 75
    RRM_SF; RNA recognition motif (RRM) superfamily
    pfam05183
    Location:380 → 957
    RdRP; RNA dependent RNA polymerase

  6. XM_024548237.1 → XP_024404005.1  RNA-dependent RNA polymerase 6-like isoform X1

    UniProtKB/TrEMBL
    A0MD71
    Conserved Domains (2) summary
    cd00590
    Location:6 → 75
    RRM_SF; RNA recognition motif (RRM) superfamily
    pfam05183
    Location:380 → 957
    RdRP; RNA dependent RNA polymerase

  7. XM_024548241.1 → XP_024404009.1  RNA-dependent RNA polymerase 6-like isoform X2

    Conserved Domains (1) summary
    pfam05183
    Location:238 → 815
    RdRP; RNA dependent RNA polymerase

  8. XM_024548235.1 → XP_024404003.1  RNA-dependent RNA polymerase 6-like isoform X1

    UniProtKB/TrEMBL
    A0MD71
    Conserved Domains (2) summary
    cd00590
    Location:6 → 75
    RRM_SF; RNA recognition motif (RRM) superfamily
    pfam05183
    Location:380 → 957
    RdRP; RNA dependent RNA polymerase

  9. XM_024548240.1 → XP_024404008.1  RNA-dependent RNA polymerase 6-like isoform X2

    Conserved Domains (1) summary
    pfam05183
    Location:238 → 815
    RdRP; RNA dependent RNA polymerase
Nucleotide Protein
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