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LOC113002593 Sharpr-MPRA regulatory region 10457 [ Homo sapiens (human) ]

Gene ID: 113002593, updated on 18-May-2021

Summary

Gene symbol
LOC113002593
Gene description
Sharpr-MPRA regulatory region 10457
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic sequence was predicted to be a transcriptional regulatory region based on chromatin state analysis from the ENCODE (ENCyclopedia Of DNA Elements) project. It was validated as a functional enhancer by the Sharpr-MPRA technique (Systematic high-resolution activation and repression profiling with reporter tiling using massively parallel reporter assays) in HepG2 liver carcinoma cells (group: HepG2 Activating DNase matched - State 5:Enh, candidate strong enhancer, open chromatin), with weaker activity in K562 erythroleukemia cells (group: K562 Activating non-DNase unmatched - State 6:EnhF, candidate strong enhancer, flanking open chromatin). [provided by RefSeq, Apr 2021]
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Genomic context

See LOC113002593 in Genome Data Viewer
Location:
5q
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (78597026..78597320)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (77892849..77893143)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene NFE2L2 motif-containing MPRA enhancer 287 Neighboring gene SCAMP1 antisense RNA 1 Neighboring gene secretory carrier membrane protein 1 Neighboring gene LHFPL tetraspan subfamily member 2 Neighboring gene high mobility group box 1 pseudogene 21 Neighboring gene NFE2L2 motif-containing MPRA enhancer 185

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_061604.1 

    Range
    101..395
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    78597026..78597320
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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