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Vmn1r40 vomeronasal 1 receptor 40 [ Mus musculus (house mouse) ]

Gene ID: 113855, updated on 8-Feb-2024

Summary

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Official Symbol
Vmn1r40provided by MGI
Official Full Name
vomeronasal 1 receptor 40provided by MGI
Primary source
MGI:MGI:2148518
See related
Ensembl:ENSMUSG00000096051 AllianceGenome:MGI:2148518
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V1rb7
Summary
Predicted to enable signaling receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within sensory perception of chemical stimulus. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to several human genes including VN1R17P (vomeronasal 1 receptor 17 pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
6 D1; 6 40.02 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (89688243..89692117)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (89711261..89715135)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6453 Neighboring gene thioredoxin reductase 3 Neighboring gene vomeronasal 1 receptor, pseudogene 25 Neighboring gene vomeronasal 1 receptor 41 Neighboring gene vomeronasal 1 receptor, pseudogene 26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Deficient pheromone responses in mice lacking a cluster of vomeronasal receptor genes. Del Punta K, et al. Nature, 2002 Sep 5. PMID 12214233
  2. Sequence diversity and genomic organization of vomeronasal receptor genes in the mouse. Del Punta K, et al. Genome Res, 2000 Dec. PMID 11116090, Free PMC Article
  3. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article
  4. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
  5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables pheromone receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables signaling receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to pheromone IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sensory perception of chemical stimulus TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
vomeronasal type-1 receptor 40
Names
vomernasal 1 receptor Vmn1r40
vomeronasal 1 receptor, B7
vomeronasal type 1 receptor B7
vomeronasal type-1 receptor A11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053228.1 → NP_444458.1  vomeronasal type-1 receptor 40

    See identical proteins and their annotated locations for NP_444458.1

    Status: PROVISIONAL

    Source sequence(s)
    AF291493
    Consensus CDS
    CCDS20346.1
    UniProtKB/Swiss-Prot
    Q9EQ46
    UniProtKB/TrEMBL
    F6MAD9, F6MAE6, F6MAE7, F6MAF3
    Related
    ENSMUSP00000074655.2, ENSMUST00000075158.2
    Conserved Domains (1) summary
    cd13949
    Location:12 → 305
    7tm_V1R_pheromone; vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    89688243..89692117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006505381.3 → XP_006505444.1  vomeronasal type-1 receptor 40 isoform X1

    See identical proteins and their annotated locations for XP_006505444.1

    UniProtKB/Swiss-Prot
    Q9EQ46
    UniProtKB/TrEMBL
    F6MAD9, F6MAE6, F6MAE7, F6MAF3
    Conserved Domains (1) summary
    cd13949
    Location:12 → 305
    7tm_V1R_pheromone; vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily

  2. XM_006505382.3 → XP_006505445.1  vomeronasal type-1 receptor 40 isoform X1

    See identical proteins and their annotated locations for XP_006505445.1

    UniProtKB/Swiss-Prot
    Q9EQ46
    UniProtKB/TrEMBL
    F6MAD9, F6MAE6, F6MAE7, F6MAF3
    Related
    ENSMUSP00000154581.2, ENSMUST00000228642.2
    Conserved Domains (1) summary
    cd13949
    Location:12 → 305
    7tm_V1R_pheromone; vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9EQ46.1 GenPept UniProtKB/Swiss-Prot:Q9EQ46

Gene LinkOut

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