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Laptm4b lysosomal-associated protein transmembrane 4B [ Mus musculus (house mouse) ]

Gene ID: 114128, updated on 23-Jun-2021

Summary

Official Symbol
Laptm4bprovided by MGI
Official Full Name
lysosomal-associated protein transmembrane 4Bprovided by MGI
Primary source
MGI:MGI:1890494
See related
Ensembl:ENSMUSG00000022257
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
LAPTM4beta; C330023P13Rik
Expression
Ubiquitous expression in adrenal adult (RPKM 150.7), ovary adult (RPKM 83.2) and 24 other tissues See more
Orthologs
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Genomic context

See Laptm4b in Genome Data Viewer
Location:
15; 15 B3.1
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (34238172..34284441)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (34238026..34284295)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (34167781..34214050)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41291 Neighboring gene metadherin Neighboring gene predicted gene, 38594 Neighboring gene eukaryotic translation initiation factor 4A2 pseudogene Neighboring gene matrilin 2 Neighboring gene RIKEN cDNA 9430069I07 gene Neighboring gene predicted gene, 24523 Neighboring gene ribosomal protein L30

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ceramide binding ISO
Inferred from Sequence Orthology
more info
 
enables kinase binding ISO
Inferred from Sequence Orthology
more info
 
enables phosphatidylinositol bisphosphate binding ISO
Inferred from Sequence Orthology
more info
 
enables ubiquitin protein ligase binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cell projection ISO
Inferred from Sequence Orthology
more info
 
located_in early endosome ISO
Inferred from Sequence Orthology
more info
 
located_in endosome ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in late endosome membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in lysosomal membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in lysosomal membrane ISO
Inferred from Sequence Orthology
more info
 
located_in lysosome ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in multivesicular body membrane ISO
Inferred from Sequence Orthology
more info
 
located_in multivesicular body, internal vesicle ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
lysosomal-associated transmembrane protein 4B
Names
lysosomal-associated transmembrane protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_033521.3NP_277056.1  lysosomal-associated transmembrane protein 4B

    See identical proteins and their annotated locations for NP_277056.1

    Status: PROVISIONAL

    Source sequence(s)
    AC133101
    Consensus CDS
    CCDS27416.1
    UniProtKB/Swiss-Prot
    Q91XQ6
    UniProtKB/TrEMBL
    B2CZK6
    Related
    ENSMUSP00000022867.4, ENSMUST00000022867.5
    Conserved Domains (1) summary
    cl04276
    Location:9227
    Mtp; Golgi 4-transmembrane spanning transporter

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    34238172..34284441
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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