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LOC11412826 40S ribosomal protein S4-2 [ Medicago truncatula (barrel medic) ]

Gene ID: 11412826, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11412826
Gene description
40S ribosomal protein S4-2
Locus tag
MtrunA17_Chr7g0243211
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11412826 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 7 NC_053048.1 (32560509..32563470)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 7 NC_016413.2 (25785045..25787992)

Chromosome 7 - NC_053048.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 1-like Neighboring gene uncharacterized LOC11412134 Neighboring gene ferritin-1, chloroplastic Neighboring gene transfer RNA glycine (anticodon GCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S4-2
Names
40S ribosomal S4-like protein
putative ribosomal protein S4e

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053048.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    32560509..32563470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003623308.4 → XP_003623356.1  40S ribosomal protein S4-2

    See identical proteins and their annotated locations for XP_003623356.1

    UniProtKB/TrEMBL
    G7KT73
    Conserved Domains (1) summary
    PLN00036
    Location:1 → 255
    PLN00036; 40S ribosomal protein S4; Provisional
Nucleotide Protein
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Molecular Biology Databases