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LINC02631 long intergenic non-protein coding RNA 2631 [ Homo sapiens (human) ]

Gene ID: 114515520, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02631provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2631provided by HGNC
Primary source
HGNC:HGNC:54112
See related
Ensembl:ENSG00000237772 AllianceGenome:HGNC:54112
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
2q22.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (138601599..138617469)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (139047272..139063118)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (139359169..139375039)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11986 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11987 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16594 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16595 Neighboring gene speckle type BTB/POZ protein like Neighboring gene uncharacterized LOC124905958 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:139401763-139402962 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:139428205-139428928 Neighboring gene neurexophilin 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16596 Neighboring gene NANOG hESC enhancer GRCh37_chr2:139512250-139512751 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:139579897-139580098 Neighboring gene RN7SK pseudogene 286

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LncRNA expression profiling and its relationship with DNA damage in Cr(VI)-treated 16HBE cells. Hu G, et al. Sci Total Environ, 2019 Mar 10. PMID 30476843

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Clone Names

  • AC092620.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_174957.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092620

  2. NR_174958.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092620

  3. NR_174959.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092620
    Related
    ENST00000664633.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    138601599..138617469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    139047272..139063118
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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