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palb2 partner and localizer of BRCA2 [ Gadus morhua (Atlantic cod) ]

Gene ID: 115539873, updated on 17-Mar-2024

Summary

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Gene symbol
palb2
Gene description
partner and localizer of BRCA2
See related
Ensembl:ENSGMOG00000030234
Gene type
protein coding
RefSeq status
MODEL
Organism
Gadus morhua
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Zeiogadaria; Gadariae; Gadiformes; Gadoidei; Gadidae; Gadus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
100 current gadMor3.0 (GCF_902167405.1) 3 NC_044050.1 (19582347..19590235, complement)

Chromosome 3 - NC_044050.1Genomic Context describing neighboring genes Neighboring gene RASD family member 3 Neighboring gene polo-like kinase 1 (Drosophila) Neighboring gene collagen alpha-1(XI) chain-like Neighboring gene retinol dehydrogenase 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044050.1 Chromosome 3 Reference gadMor3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Atlantic cod reveals a unique immune system. Star B, et al. Nature, 2011 Aug 10. PMID 21832995, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
partner and localizer of BRCA2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gadus morhua Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference gadMor3.0 Primary Assembly

Genomic

  1. NC_044050.1 Reference gadMor3.0 Primary Assembly

    Range
    19582347..19590235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030350730.1 → XP_030206590.1  partner and localizer of BRCA2 isoform X2

    Conserved Domains (2) summary
    PHA03247
    Location:921 → 1112
    PHA03247; large tegument protein UL36; Provisional
    pfam16756
    Location:1097 → 1436
    PALB2_WD40; Partner and localizer of BRCA2 WD40 domain

  2. XM_030350728.1 → XP_030206588.1  partner and localizer of BRCA2 isoform X1

    UniProtKB/TrEMBL
    A0A8C5BFK8
    Conserved Domains (2) summary
    PHA03247
    Location:922 → 1113
    PHA03247; large tegument protein UL36; Provisional
    pfam16756
    Location:1098 → 1437
    PALB2_WD40; Partner and localizer of BRCA2 WD40 domain

  3. XM_030350729.1 → XP_030206589.1  partner and localizer of BRCA2 isoform X1

    UniProtKB/TrEMBL
    A0A8C5BFK8
    Related
    ENSGMOP00000045626.1, ENSGMOT00000068234.1
    Conserved Domains (2) summary
    PHA03247
    Location:922 → 1113
    PHA03247; large tegument protein UL36; Provisional
    pfam16756
    Location:1098 → 1437
    PALB2_WD40; Partner and localizer of BRCA2 WD40 domain

RNA

  1. XR_003976052.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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