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NFIX nuclear factor I X [ Lontra canadensis (Northern American river otter) ]

Gene ID: 116883151, updated on 18-Mar-2024

Summary

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Gene symbol
NFIX
Gene description
nuclear factor I X
Gene type
protein coding
RefSeq status
MODEL
Organism
Lontra canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Lontra
Orthologs
human mouse all
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Genomic context

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See NFIX in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current GSC_riverotter_1.0 (GCF_010015895.1) Unplaced Scaffold NW_022631082.1 (6762289..6855923)

NW_022631082.1Genomic Context describing neighboring genes Neighboring gene GADD45G interacting protein 1 Neighboring gene DAN domain BMP antagonist family member 5 Neighboring gene uncharacterized LOC116854174 Neighboring gene LYL1 basic helix-loop-helix family member Neighboring gene tRNA methyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022631082 Unplaced Scaffold Reference GSC_riverotter_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor 1 X-type

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lontra canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GSC_riverotter_1.0

Genomic

  1. NW_022631082.1 Reference GSC_riverotter_1.0

    Range
    6762289..6855923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032884166.1 → XP_032740057.1  nuclear factor 1 X-type isoform X6

    Conserved Domains (3) summary
    pfam10524
    Location:9 → 46
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:213 → 502
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:68 → 170
    MH1; N-terminal Mad Homology 1 (MH1) domain

  2. XM_032884167.1 → XP_032740058.1  nuclear factor 1 X-type isoform X7

    Conserved Domains (3) summary
    pfam10524
    Location:2 → 38
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:205 → 494
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:60 → 162
    MH1; N-terminal Mad Homology 1 (MH1) domain

  3. XM_032884161.1 → XP_032740052.1  nuclear factor 1 X-type isoform X2

    Conserved Domains (3) summary
    pfam10524
    Location:18 → 54
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:221 → 510
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:76 → 178
    MH1; N-terminal Mad Homology 1 (MH1) domain

  4. XM_032884163.1 → XP_032740054.1  nuclear factor 1 X-type isoform X4

    Conserved Domains (3) summary
    pfam10524
    Location:22 → 58
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:225 → 514
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:80 → 182
    MH1; N-terminal Mad Homology 1 (MH1) domain

  5. XM_032884160.1 → XP_032740051.1  nuclear factor 1 X-type isoform X1

    Conserved Domains (2) summary
    pfam00859
    Location:166 → 455
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:21 → 123
    MH1; N-terminal Mad Homology 1 (MH1) domain

  6. XM_032884162.1 → XP_032740053.1  nuclear factor 1 X-type isoform X3

    Conserved Domains (2) summary
    pfam00859
    Location:166 → 414
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:21 → 123
    MH1; N-terminal Mad Homology 1 (MH1) domain

  7. XM_032884168.1 → XP_032740059.1  nuclear factor 1 X-type isoform X8

    Conserved Domains (3) summary
    pfam10524
    Location:8 → 45
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    pfam00859
    Location:212 → 417
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:67 → 169
    MH1; N-terminal Mad Homology 1 (MH1) domain

  8. XM_032884165.1 → XP_032740056.1  nuclear factor 1 X-type isoform X5

    Conserved Domains (2) summary
    pfam00859
    Location:166 → 330
    CTF_NFI; CTF/NF-I family transcription modulation region
    cl00055
    Location:21 → 123
    MH1; N-terminal Mad Homology 1 (MH1) domain
Nucleotide Protein
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