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Efemp1 EGF containing fibulin extracellular matrix protein 1 [ Rattus rattus (black rat) ]

Gene ID: 116912674, updated on 18-Mar-2024

Summary

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Gene symbol
Efemp1
Gene description
EGF containing fibulin extracellular matrix protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus rattus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
T16
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Rrattus_CSIRO_v1 (GCF_011064425.1) 11 NC_046164.1 (96427124..96494746, complement)

Chromosome 11 - NC_046164.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116912057 Neighboring gene coiled-coil domain containing 85A Neighboring gene U4 spliceosomal RNA Neighboring gene vomeronasal type-1 receptor 4-like Neighboring gene zinc finger protein 54-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046164.1 Chromosome 11 Reference Rrattus_CSIRO_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interaction of DA41, a DAN-binding protein, with the epidermal growth factor-like protein, S(1-5). Ozaki T, et al. Biochem Biophys Res Commun, 1997 Aug 18. PMID 9268694

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
EGF-containing fibulin-like extracellular matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rrattus_CSIRO_v1 Primary Assembly

Genomic

  1. NC_046164.1 Reference Rrattus_CSIRO_v1 Primary Assembly

    Range
    96427124..96494746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032916791.1 → XP_032772682.1  EGF-containing fibulin-like extracellular matrix protein 1

    Conserved Domains (3) summary
    smart00179
    Location:214 → 244
    EGF_CA; Calcium-binding EGF-like domain
    pfam07645
    Location:173 → 206
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:234 → 257
    cEGF; Complement Clr-like EGF-like

  2. XM_032916792.1 → XP_032772683.1  EGF-containing fibulin-like extracellular matrix protein 1

    Conserved Domains (3) summary
    smart00179
    Location:214 → 244
    EGF_CA; Calcium-binding EGF-like domain
    pfam07645
    Location:173 → 206
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:234 → 257
    cEGF; Complement Clr-like EGF-like

  3. XM_032916793.1 → XP_032772684.1  EGF-containing fibulin-like extracellular matrix protein 1

    Conserved Domains (3) summary
    smart00179
    Location:214 → 244
    EGF_CA; Calcium-binding EGF-like domain
    pfam07645
    Location:173 → 206
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:234 → 257
    cEGF; Complement Clr-like EGF-like
Nucleotide Protein
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