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PDXDC1 pyridoxal dependent decarboxylase domain containing 1 [ Lacerta agilis ]

Gene ID: 117057217, updated on 19-Mar-2024

Summary

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Gene symbol
PDXDC1
Gene description
pyridoxal dependent decarboxylase domain containing 1
See related
EnsemblRapid:ENSLAGG00000015689
Gene type
protein coding
RefSeq status
MODEL
Organism
Lacerta agilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Lacerta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
24
Annotation release Status Assembly Chr Location
100 current rLacAgi1.pri (GCF_009819535.1) 13 NC_046324.1 (37708229..37747508, complement)

Chromosome 13 - NC_046324.1Genomic Context describing neighboring genes Neighboring gene RRN3 homolog, RNA polymerase I transcription factor Neighboring gene N-terminal asparagine amidase Neighboring gene MPV17 mitochondrial inner membrane protein like Neighboring gene uncharacterized LOC117056470

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046324.1 Chromosome 13 Reference rLacAgi1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Karyotype evolution in monitor lizards: cross-species chromosome mapping of cDNA reveals highly conserved synteny and gene order in the Toxicofera clade. Srikulnath K, et al. Chromosome Res, 2013 Dec. PMID 24343421

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbon-carbon lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pyridoxal-dependent decarboxylase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lacerta agilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rLacAgi1.pri Primary Assembly

Genomic

  1. NC_046324.1 Reference rLacAgi1.pri Primary Assembly

    Range
    37708229..37747508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033168102.1 → XP_033023993.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

    Related
    ENSLAGP00000021215.1, ENSLAGT00000022880.1
    Conserved Domains (1) summary
    cl18945
    Location:173 → 398
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  2. XM_033168103.1 → XP_033023994.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X2

    Conserved Domains (1) summary
    cl18945
    Location:82 → 307
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
Heading Accession and Version

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