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ZEB1 zinc finger E-box binding homeobox 1 [ Trachemys scripta elegans ]

Gene ID: 117872082, updated on 19-Mar-2024

Summary

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Gene symbol
ZEB1
Gene description
zinc finger E-box binding homeobox 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 2 NC_048299.1 (29181746..29380427, complement)

Chromosome 2 - NC_048299.1Genomic Context describing neighboring genes Neighboring gene kinesin family member 5B Neighboring gene Rho GTPase activating protein 12 Neighboring gene uncharacterized LOC117872084 Neighboring gene uncharacterized LOC117872085

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048299.1 Chromosome 2 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger E-box-binding homeobox 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048299.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    29181746..29380427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034760134.1 → XP_034616025.1  zinc finger E-box-binding homeobox 1 isoform X1

  2. XM_034760136.1 → XP_034616027.1  zinc finger E-box-binding homeobox 1 isoform X3

  3. XM_034760135.1 → XP_034616026.1  zinc finger E-box-binding homeobox 1 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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