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APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 [ Trachemys scripta elegans ]

Gene ID: 117875856, updated on 19-Mar-2024

Summary

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Gene symbol
APOBEC2
Gene description
apolipoprotein B mRNA editing enzyme catalytic subunit 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachemys scripta elegans (sub-species: elegans)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
100 current CAS_Tse_1.0 (GCF_013100865.1) 4 NC_048301.1 (126583105..126592923, complement)

Chromosome 4 - NC_048301.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit alpha Neighboring gene O-acyl-ADP-ribose deacylase 1 Neighboring gene uncharacterized LOC117875861 Neighboring gene translocator protein 2 Neighboring gene transmembrane protein 183B-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_048301.1 Chromosome 4 Reference CAS_Tse_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C->U-editing enzyme APOBEC-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAS_Tse_1.0 Primary Assembly

Genomic

  1. NC_048301.1 Reference CAS_Tse_1.0 Primary Assembly

    Range
    126583105..126592923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034767373.1 → XP_034623264.1  C->U-editing enzyme APOBEC-2

Nucleotide Protein
Heading Accession and Version

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