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fam107b family with sequence similarity 107 member B [ Scophthalmus maximus (turbot) ]

Gene ID: 118315141, updated on 20-Mar-2024

Summary

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Gene symbol
fam107b
Gene description
family with sequence similarity 107 member B
See related
EnsemblRapid:ENSSMAG00025004892
Gene type
protein coding
RefSeq status
MODEL
Organism
Scophthalmus maximus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
101 current ASM2237912v1 (GCF_022379125.1) 7 NC_061521.1 (16076044..16095488, complement)
100 previous assembly ASM1334776v1 (GCF_013347765.1) 10 NC_049697.1 (14975772..14995336, complement)

Chromosome 7 - NC_061521.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118314994 Neighboring gene zinc finger homeobox protein 3-like Neighboring gene deoxyribodipyrimidine photo-lyase Neighboring gene glycine cleavage system protein H (aminomethyl carrier), a Neighboring gene uncharacterized LOC118315140 Neighboring gene endosome-lysosome associated apoptosis and autophagy regulator family member 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput sequence analysis of turbot (Scophthalmus maximus) transcriptome using 454-pyrosequencing for the discovery of antiviral immune genes. Pereiro P, et al. PLoS One, 2012. PMID 22629298, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein FAM107B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scophthalmus maximus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2237912v1 Primary Assembly

Genomic

  1. NC_061521.1 Reference ASM2237912v1 Primary Assembly

    Range
    16076044..16095488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035642167.2 → XP_035498060.1  protein FAM107B isoform X2

    UniProtKB/TrEMBL
    A0A2U9BW91, A0A8D3CIL5
    Conserved Domains (1) summary
    pfam06625
    Location:9 → 122
    DUF1151; Protein of unknown function (DUF1151)

  2. XM_035642164.2 → XP_035498057.1  protein FAM107B isoform X2

    UniProtKB/TrEMBL
    A0A2U9BW91, A0A8D3CIL5
    Conserved Domains (1) summary
    pfam06625
    Location:9 → 122
    DUF1151; Protein of unknown function (DUF1151)

  3. XM_035642166.2 → XP_035498059.1  protein FAM107B isoform X2

    UniProtKB/TrEMBL
    A0A2U9BW91, A0A8D3CIL5
    Related
    ENSSMAP00025015028.1, ENSSMAT00025015876.1
    Conserved Domains (1) summary
    pfam06625
    Location:9 → 122
    DUF1151; Protein of unknown function (DUF1151)

  4. XM_035642163.2 → XP_035498056.1  protein FAM107B isoform X1

    UniProtKB/TrEMBL
    A0A2U9BXI1, A0A8D3CIL5
    Related
    ENSSMAP00025015024.1, ENSSMAT00025015872.1
    Conserved Domains (1) summary
    pfam06625
    Location:38 → 151
    DUF1151; Protein of unknown function (DUF1151)
Nucleotide Protein Strain
Heading Accession and Version

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